A B C D E F G H I J K L M N O P Q R S T U V W X Y

A

accurate_mode - Variable in class bunwarpj.FinalAction

level of accuracy

ACCURATE_MODE - Static variable in class bunwarpj.MainDialog

accurate mode constant

accurate_mode - Variable in class bunwarpj.Transformation

level of accuracy

actionPerformed(ActionEvent) - Method in class bunwarpj.ClearAll

Actions to take place with the dialog for clearing everything

actionPerformed(ActionEvent) - Method in class bunwarpj.IODialog

Actions to be taking during the dialog.

actionPerformed(ActionEvent) - Method in class bunwarpj.MainDialog

Actions to be taken during the dialog.

adaptCoefficients() - Method in class bunwarpj.IODialog

Adapt the transformation coefficients to a new image size.

adaptCoefficients(double, double, int, double[][], double[][]) - Static method in class bunwarpj.MiscTools

Adapt B-spline coefficients to a scale factor

adaptCoefficientsCommandLine(String[]) - Static method in class bunwarpj.bUnwarpJ_

Method to adapt coefficients to new image size.

adaptCoefficientsMacro(String, String, String, String, String) - Static method in class bunwarpj.bUnwarpJ_

Method to adapt an elastic transformation given a new image size.

ADD_CROSS - Static variable in class bunwarpj.PointAction

constant to identify the add cross tool

addImageList(Choice) - Method in class bunwarpj.MainDialog

Add the image list to the list of choices.

addMaskPoint(int, int) - Method in class bunwarpj.PointHandler

Add a point to the mask.

addPoint(int, int) - Method in class bunwarpj.PointHandler

Add a point to the list of points.

addWorkload(int) - Static method in class bunwarpj.ProgressBar

Extend the amount of work to perform by batch.

alignImagesBatch(ImagePlus, ImagePlus, ImageProcessor, ImageProcessor, int, int, int, int, double, double, double, double, double, double) - Static method in class bunwarpj.bUnwarpJ_

Method for images alignment with no graphical interface.

alignImagesBatch(ImagePlus, ImagePlus, ImageProcessor, ImageProcessor, Param) - Static method in class bunwarpj.bUnwarpJ_

Method for images alignment with no graphical interface.

alignImagesBatch(ImagePlus, ImagePlus, ImageProcessor, ImageProcessor, int, int, int, int, double, double, double, double, double, double, double, double) - Static method in class bunwarpj.bUnwarpJ_

Method for images alignment with no graphical interface.

alignImagesCommandLine(String[]) - Static method in class bunwarpj.bUnwarpJ_

Method for images alignment with no graphical interface.

antiSymmetricFirMirrorOffBounds1D(double[], double[], double[]) - Method in class bunwarpj.BSplineModel

antiSymmetricPadding(double[][], int) - Static method in class bunwarpj.MathTools

antiSymmetricPadding(double[], int, int) - Static method in class bunwarpj.MathTools

antiSymmetricPadding(float[], int, int) - Static method in class bunwarpj.MathTools

applyRawTransformationToSource(double[][], double[][]) - Method in class bunwarpj.MainDialog

Apply a raw transformation to the source image.

applyRawTransformationToSource(ImagePlus, ImagePlus, BSplineModel, double[][], double[][]) - Static method in class bunwarpj.MiscTools

Apply a given raw transformation to the source image.

applyTransformationMT(ImagePlus, ImagePlus, BSplineModel, int, double[][], double[][]) - Static method in class bunwarpj.MiscTools

Apply a given B-spline transformation to the source (gray-scale) image.

applyTransformationMultiThread(int, double[][], double[][], boolean) - Method in class bunwarpj.Transformation

Apply the final transformation (multi-thread version).

applyTransformationToSource(int, double[][], double[][]) - Method in class bunwarpj.MainDialog

Apply the transformation defined by the spline coefficients to the source image.

applyTransformationToSource(ImagePlus, ImagePlus, BSplineModel, int, double[][], double[][]) - Static method in class bunwarpj.MiscTools

Deprecated.

applyTransformationToSource(ImagePlus, ImagePlus, BSplineModel, BSplineModel, BSplineModel, int, double[][], double[][]) - Static method in class bunwarpj.MiscTools

Deprecated.

applyTransformationToSourceMT(ImagePlus, ImagePlus, int, double[][], double[][]) - Static method in class bunwarpj.MiscTools

Apply a given B-spline transformation to the source (gray-scale) image.

applyTransformationToSourceMT(ImagePlus, ImagePlus, BSplineModel, int, double[][], double[][]) - Static method in class bunwarpj.MiscTools

Apply a given B-spline transformation to the source (gray-scale) image.

auxFactorHeight - Variable in class bunwarpj.Transformation.EvaluateSimilarityTile

factor height

auxFactorHeight - Variable in class bunwarpj.Transformation.OutputTileMaker

auxFactorWidth - Variable in class bunwarpj.Transformation.EvaluateSimilarityTile

factor width

auxFactorWidth - Variable in class bunwarpj.Transformation.OutputTileMaker

auxSource - Variable in class bunwarpj.Transformation.EvaluateSimilarityTile

current source image

auxSource - Variable in class bunwarpj.Transformation.GrayscaleResultTileMaker

auxSource - Variable in class bunwarpj.Transformation.OutputTileMaker

auxSourceMsk - Variable in class bunwarpj.Transformation.ColorResultTileMaker

auxSourceMsk - Variable in class bunwarpj.Transformation.EvaluateSimilarityTile

source mask

auxSourceMsk - Variable in class bunwarpj.Transformation.GrayscaleResultTileMaker

auxSourceMsk - Variable in class bunwarpj.Transformation.OutputTileMaker

auxTarget - Variable in class bunwarpj.Transformation.EvaluateSimilarityTile

current target image

auxTarget - Variable in class bunwarpj.Transformation.OutputTileMaker

auxTargetCurrentHeight - Variable in class bunwarpj.Transformation.ColorResultTileMaker

auxTargetCurrentHeight - Variable in class bunwarpj.Transformation.ConcurrentDeformation

auxTargetCurrentHeight - Variable in class bunwarpj.Transformation.GrayscaleResultTileMaker

auxTargetCurrentHeight - Variable in class bunwarpj.Transformation.OutputTileMaker

auxTargetCurrentWidth - Variable in class bunwarpj.Transformation.ColorResultTileMaker

auxTargetCurrentWidth - Variable in class bunwarpj.Transformation.ConcurrentDeformation

auxTargetCurrentWidth - Variable in class bunwarpj.Transformation.GrayscaleResultTileMaker

auxTargetCurrentWidth - Variable in class bunwarpj.Transformation.OutputTileMaker

auxTargetMsk - Variable in class bunwarpj.Transformation.ColorResultTileMaker

auxTargetMsk - Variable in class bunwarpj.Transformation.EvaluateSimilarityTile

target mask

auxTargetMsk - Variable in class bunwarpj.Transformation.GrayscaleResultTileMaker

auxTargetMsk - Variable in class bunwarpj.Transformation.OutputTileMaker