bunwarpj
Class Mask

java.lang.Object
  bunwarpj.Mask

public class Mask
extends java.lang.Object

This class is responsible for the mask preprocessing that takes place concurrently with user-interface events. It contains methods to compute the mask pyramids.

Field Summary

private int	height mask height
private boolean[]	mask mask flags
private boolean	mask_from_the_stack flag to check if the mask comes from the stack of images
private java.awt.Polygon	polygon polygon composing the flag
private int	width mask width

Constructor Summary

Mask(ij.process.ImageProcessor ip, boolean take_mask)
Empty constructor, the input image is used only to take the image size if take_mask is false, otherwise, it is used as the mask information.

Method Summary

void	BoundingBox(int[] corners) Bounding box for the mask.
void	clearMask() Set to true every pixel of the full-size mask.
void	fillMask(int tool) Fill the mask associated to the mask points.
java.awt.Point	getPoint(int i) Get a point from the mask.
boolean	getValue(double x, double y) Get the value of the mask at a certain pixel.
boolean	isFromStack() Check if the mask was taken from the stack.
int	numberOfMaskPoints() Get the number of points in the mask.
void	readFile(java.lang.String filename) Read mask from file.
void	setMaskPoints(java.util.Vector<java.awt.Point> listMaskPoints) Set the mask points.
void	setValue(int u, int v, boolean value) Sets the value of the mask at a certain pixel.
void	showMask() Show mask.

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Field Detail

mask

private boolean[] mask

mask flags

width

private int width

mask width

height

private int height

mask height

polygon

private java.awt.Polygon polygon

polygon composing the flag

mask_from_the_stack

private boolean mask_from_the_stack

flag to check if the mask comes from the stack of images

Constructor Detail

Mask

public Mask(ij.process.ImageProcessor ip,
            boolean take_mask)

Empty constructor, the input image is used only to take the image size if take_mask is false, otherwise, it is used as the mask information.

Parameters:

ip - image

take_mask - flag to take the mask from the stack of images

Method Detail

BoundingBox

public void BoundingBox(int[] corners)

Bounding box for the mask. An array is returned with the convention [x0,y0,xF,yF]. This array is returned in corners. This vector should be already resized.

Parameters:

corners - array of coordinates of the bounding box

clearMask

public void clearMask()

Set to true every pixel of the full-size mask.

fillMask

public void fillMask(int tool)

Fill the mask associated to the mask points.

Parameters:

tool - option to invert or not the mask

getValue

public boolean getValue(double x,
                        double y)

Get the value of the mask at a certain pixel. If the sample is not integer then the closest point is returned.

Parameters:

x - x- coordinate of the pixel

y - y- coordinate of the pixel

Returns:

value of the mask at the pixel in (x,y)

getPoint

public java.awt.Point getPoint(int i)

Get a point from the mask.

Parameters:

i - index of the point in the polygong

Returns:

corresponding point

isFromStack

public boolean isFromStack()

Check if the mask was taken from the stack.

Returns:

True if the mask was taken from the stack

numberOfMaskPoints

public int numberOfMaskPoints()

Get the number of points in the mask.

Returns:

number of point of the polygon that composes the mask

readFile

public void readFile(java.lang.String filename)

Read mask from file. An error is shown if the file read is not of the same size as the previous mask.

Parameters:

filename - name of the mask file

showMask

public void showMask()

Show mask.

setMaskPoints

public void setMaskPoints(java.util.Vector<java.awt.Point> listMaskPoints)

Set the mask points.

Parameters:

listMaskPoints - list of points composing the mask

setValue

public void setValue(int u,
                     int v,
                     boolean value)

Sets the value of the mask at a certain pixel.

Parameters:

u - x- coordinate of the pixel

v - y- coordinate of the pixel

value - mask value to be set