1. C.O.S. Sorzano. Análisis Espectral de Películas Mamográficas. Univ. Málaga (1997)
  2. J.M.Carazo, C.O.S. Sorzano, E. Rietzel, R.R. Schröder, R. Marabini. Discrete Tomography in Electron Microscopy . Discrete Tomography: Foundations, Algorithms and Applications, 405-416. Ed. Birkhauser (1999).
  3. C.O.S. Sorzano. Generador automático de interfaces gráficos de usuario. Univ. Málaga (2000)
  4. C.O.S. Sorzano. Algoritmos iterativos de tomografía tridimensional en microscopía electrónica de transmisión . Univ. Politécnica de Madrid (2002)
  5. S. Jonic, P. Thévenaz, C.O.S. Sorzano, M. Unser. Spline-based 3D-to-2D image registration for image-guided surgery and 3D electron microscopy. Biophotonics for life sciences and medicine. Eds. M. Faupel, P. Smiegielski, A. Brandenburg, J. Fontaine. Fontis Media, 2005.
  6. J.M. Carazo, G.T. Herman, C.O.S. Sorzano, R. Marabini. Algorithms for three-dimensional reconstruction from imperfect projection data provided by electron microscopy. Electron Tomography: methods for three-dimensional visualization of structures in the cell. Ed. J. Frank. Springer, 2nd edition, 2006.
  7. A. Otero Quintana, C.O.S. Sorzano, R. García García. Aprenda a programar en C mediante ejemplos. Ed. Tórculo, 2008.
  8. S. Jonic, C.O.S. Sorzano. Splines for bioimaging. Optical and Digital Image Processing: Fundamentals and Applications. Eds. G. Cristóbal, P. Schelkens, H. Thienpont. Wiley VCH, pp 119-134 (2011) Original full chapter
  9. C.O.S. Sorzano, J. M. de la Rosa Trevín, J. Otón, J. J. Vega, J. Cuenca, A. Zaldívar-Peraza, J. Gómez-Blanco, J. Vargas, A. Quintana, R. Marabini, J. M. Carazo. Semiautomatic, high-throughput, high-resolution protocol for three-dimensional reconstruction of Single Particles in Electron Microscopy. Nanoimaging: Methods and Protocols. Eds. Alioscka Sousa, Michael Kruhlak. Humana Press (in press)
  10. S. Jonic, C.O.S. Sorzano. Step-by-step transmission electron microscopy image analysis for computing three-dimensional structure of large macromolecular complexes. Methods Navigator (in press)

  1. C.O.S.Sorzano, R.Marabini, N.Boisset, E.Rietzel, R.Schröder, G.T.Herman, J.M.Carazo. The effect of overabundant projection directions on 3D reconstruction algorithms. Journal of Structural Biology, 133 (2,3), 108-118 (2001)
  2. C.O.S.Sorzano, J.M.Carazo, O.Trelles. Command line interfaces can be efficiently brought to graphics: COLIMATE (the COmmand LIne MATE) Software: Practice & Experience 32 (9): 873-887 (2002)
  3. J.A. Velázquez-Muriel, C.O.S.Sorzano, J.J. Fernández, J.M. Carazo. A method for estimating the CTF in electron microscopy based on ARMA models and parameter adjusting. Ultramicroscopy 96, 1:17-35. (2003, cover article)
  4. J. Zubelli, R. Marabini, C.O.S.Sorzano, G.T. Herman. Three-dimensional reconstruction by Chahine's method from electron microscopic projections corrupted by instrumental aberrations. Inverse Problems 19: 933-949 (2003)
  5. M. Gómez-Lorenzo, M. Valle, J. Frank, C. Gruss, C.O.S.Sorzano, X. S. Chen, L.E. Donate, J.M. Carazo. Large T antigen on the simian virus 40 origin of replication: a 3D snapshot prior to DNA replication. EMBO Journal 22: 6205-6213 (2003)
  6. R. Marabini, C.O.S.Sorzano, S. Matej, J.J. Fernández, J.M. Carazo, G.T. Herman. 3D reconstruction of 2D crystals. IEEE Trans. on Image Processing 13: 549-561 (2004)
  7. C.O.S.Sorzano, R. Marabini, G.T. Herman, Y. Censor, J.M. Carazo. Transfer function restoration in 3D electron microscopy via iterative data refinement. Physics in Medicine & Biology 49: 509-522 (2004)
  8. C.O.S.Sorzano, S. Jonic, C. El-Bez, J.M. Carazo, S. De Carlo, P. Thévenaz, M. Unser. A multiresolution approach to orientation assignment in 3-D electron microscopy of single particles. Journal of Structural Biology 146(3): 381-392 (2004, cover article)
  9. C.O.S.Sorzano, L.G. de la Fraga, R. Clackdoyle, J.M.Carazo. Normalizing projection images: a study of image normalizing procedures for single particle three-dimensional electron microscopy. Ultramicroscopy 101(2-4): 129-138 (2004)
  10. J.R.Bilbao, C.O.S.Sorzano, I. García, J.J. Fernández. Phan3D: Design of biological phantoms in 3D electron microscopy. Bioinformatics 20: 3286-3288 (2004)
  11. C.O.S.Sorzano, R. Marabini, J. Velázquez-Muriel, J.R. Bilbao-Castro, S.H.W. Scheres, J.M. Carazo, A. Pascual-Montano. XMIPP: a new generation of an open-source image processing package for Electron Microscopy. Journal of Structural Biology 148: 194-204 (2004)
  12. C.O.S.Sorzano, P. Thévenaz, M. Unser. Elastic registration of biological images using vector-spline regularization. IEEE Trans. on Biomedical Engineering, 52: 652-663 (2005)
  13. M. Unser, C.O.S.Sorzano, P. Thévenaz, S. Jonic, C. El-Bez, S. De Carlo, J. Conway, B. L. Trus. Spectral Signal-to-Noise Ratio and resolution assessment of 3D reconstructions. Journal of Structural Biology, 149: 243-255 (2005)
  14. J. Velázquez-Muriel, C.O.S.Sorzano, S.H.W. Scheres, J.M. Carazo. SPI-EM: Towards a tool for predicting the CATH superfamily in 3D-EM maps. Journal of Molecular Biology, 345: 759-771 (2005)
  15. S. Jonic, C.O.S.Sorzano, P. Thévenaz, C. El-Bez, S. De Carlo, M. Unser. Spline-Based image-to-volume registration for three-dimensional electron microscopy. Ultramicroscopy,  103:  303-317 (2005)
  16. S.H.W. Scheres, M. Valle, R. Nuñez, C.O.S. Sorzano, R. Marabini, G.T. Herman, J.M Carazo. Maximum-likelihood multi-reference refinement for electron microscopy images. Journal of Molecular Biology, 348: 139-149 (2005)
  17. C.O.S.Sorzano, R. Marabini, G.T. Herman, J.M. Carazo. Multiobjective algorithm parameter optimization using multivariate statistics. Pattern Recognition, 38: 2587-2601 (2005)
  18. C.O.S.Sorzano, E. Ortiz, M. López, J. Rodrigo. Improved Bayesian image denoising based on wavelets with applications to Electron Microscopy. Pattern Recognition, 39: 1205-1213 (2006)
  19. J.J. Fernández, C.O.S.Sorzano, R. Marabini, J.M. Carazo. Image processing and three-dimensional reconstruction in electron microscopy of biological specimens. IEEE Signal Processing Magazine, 23(3): 89-94 (2006)
  20. C.O.S.Sorzano, R. Marabini, A. Pascual-Montano, S.H.W. Scheres, J.M. Carazo. Optimization problems in electron microscopy of single particles. Annals of Operations Research, 148: 133-165 (2006)
  21. I. Arganda-Carreras,  C.O.S. Sorzano, R. Marabini, J.M. Carazo, C. Ortiz-de-Solórzano, J. Kybic. Consistent and elastic registration of histological sections using vector-spline regularization. Lecture Notes in Computer Science, 4241: 85-95 (2006)
  22. S. Jonic, C.O.S.Sorzano, M. Cottevieille, E. Larquet, N. Boisset.  A novel method for improvement of visualization of power spectra for classification of cryo-electron micrographs and their local areas. Journal of Structural Biology, 157: 156-167 (2007)
  23. C.O.S. Sorzano, S. Jonic, M. Cottevieille, E. Larquet, N. Boisset, S. Marco. 3D Electron microscopy of biological nanomachines: principles and applications. European Biophysics Journal, 36: 995-1013 (2007)
  24. C. Messaoudi, T. Boudier, C.O.S. Sorzano, S. Marco. TomoJ: tomography software for 3D reconstruction in transmission electron tomography. BMC Bioinformatics 8, 288 (2007)
  25. C.O.S. Sorzano, S. Jonic, R. Núñez, N. Boisset, J.M. Carazo. Fast, robust and accurate determination of transmission electron microscopy contrast transfer function. Journal Structural Biology 160: 249-262 (2007)
  26. C.O.S.Sorzano, J. Velázquez-Muriel, R. Marabini, G.T. Herman, J.M. Carazo. Volumetric restrictions in single particle 3DEM reconstruction. Pattern Recognition 41: 616-626 (2008)
  27. C.O.S. Sorzano, S. I. Arganda-Carreras, P. Thévenaz, A. Beloso, G. Morales, I. Valdés, C. Pérez-García, C. Castillo, E. Garrido, M. Unser. Elastic Image Registration of 2D gels for differential and repeatability studies. Proteomics 8: 62-65 (2008)
  28. S. Jonic, C.O.S. Sorzano, N. Boisset. Comparison of single-particle analysis and electron tomography approaches: an overview. Journal of Microscopy, 232: 562-579 (2008)
  29. S. H. W. Scheres, R. Núñez-Ramírez, C.O.S. Sorzano, J.M. Carazo, R. Marabini. Image processing for electron microscopy single-particle analysis using Xmipp. Nature protocols, 3: 977-990 (2008)
  30. A. Beuchat, P. Thévenaz, M. Unser, T. Ebner, A. Senn, F. Urner, M. Germond, C.O.S. Sorzano. Quantitative morphometrical characterization of human pronuclear zygotes. Human Reproduction, 23: 1983-1992 (2008)
  31. J.R. Bilbao-Castro, R. Marabini, C.O.S Sorzano, I. García, J.M. Carazo. Desktop supercomputing for 3D-EM: structure determination using ART with blobs. Journal of Structural Biology, 165: 19-26 (2009)
  32. A. Iriarte Ruiz, C.O.S. Sorzano, J. L. Rubio, J. M. Carazo, R. Marabini. A theoretical model for EM-ML reconstruction algorithms applied to rotating PET scanners. Physics in Medicine and Biology, 54: 1909-1934 (2009)
  33. C.O.S. Sorzano, A. Otero, E.M. Olmos, J.M. Carazo. Error analysis in the determination of the electron microscopical contrast transfer function parameters from experimental power spectra. BMC Structural Biology, 9: 18 (2009)
  34. C.O.S. Sorzano, C. Messaoudi, M. Eibauer, J.R. Bilbao-Castro, R. Hegerl, S. Nickell, S. Marco, J.M. Carazo. Marker-free image registration of electron tomography tilt-series. BMC Bioinformatics, 10: 124 (2009)
  35. C.O.S. Sorzano, E. Recarte, M. Alcorlo, J.R. Bilbao-Castro, C. San-Martín, R. Marabini, J.M. Carazo. Automatic particle selection from electron micrographs using machine learning techniques. Journal of Structural Biology, 167: 252-260 (2009)
  36. C.O.S. Sorzano, J.R. Bilbao-Castro, Y. Shkolnisky, M. Alcorlo, R. Melero, G. Caffarena-Fernández, M. Li, G. Xu, R. Marabini and J.M. Carazo. A clustering approach to multireference alignment of single-particle projections in electron microscopy. J. Structural Biology 171: 197-206 (2010)
  37. J.L. Nájera, C.E. Gómez, J. García-Arriaza, C.O.S. Sorzano, M. Esteban. Insertion of Vaccinia virus C7L host range gene into NYVAC-B genome potentiates immune responses against HIV-1 antigens. PLOS One 5, e11406 (2010)
  38. J. García-Arriaza, J.L. Nájera, C.E. Gómez, C.O.S. Sorzano, M. Esteban. Immunogenic profiling in mice of a candidate HIV/AIDS vaccine (MVA-B) expressing four HIV-1 antigens and potentiation by specific gene deletions. PLOS One 5, e12395 (2010)
  39. J.R. Bilbao-Castro, C.O.S. Sorzano, J.J. Fernández, I. García. XMSF: Structure-preserving noise reduction and pre-segmentation in microscope tomography. Bioinformatics, 26: 2786-2787 (2010)
  40. I. Arganda-Carreras, C.O.S. Sorzano, P. Thévenaz, A. Muñoz-Barrutia, J. Kybic, R. Marabini, J. M. Carazo, C. Ortiz-de-Solórzano. Non-rigid consistent registration of 2D image sequences. Physics in Medicine and Biology, 55: 6215-6242 (2010)
  41. C. Calabia-Linares, M. Pérez-Martínez, N. Martín-Cofreces, M. Alfonso-Pérez, C. Gutiérrez-Vázquez, M. Mittelbrunn, S. Ibiza, F.R. Urbano-Olmos, C. Aguado-Ballano, C.O.S. Sorzano, F. Sánchez-Madrid, E. Veiga. Clathrin drives actin accumulation at the immunological synapse. J. Cell Science, 124: 820-830 (2011)
  42. E. Rincón, J. Sáez, S. Gharbi, C.O.S. Sorzano, Y.R. Carrasco, I. Mérida. Dynamics of sorting nexin 27 translocation in activated T cells. J. Cell Science, 124: 776-788 (2011)
  43. M. Li, G. Xu, C.O.S. Sorzano, F. Sun, C. Bajaj. Single-Particle Reconstruction Using L2-Gradient Flow. J. Structural Biology, 176: 259-267 (2011)
  44. J. Vargas, J.A. Quiroga, C.O.S. Sorzano, J.C. Estrada, J.M. Carazo.  Two-step interferometry by a regularized optical flow algorithm. Optics Letters 36, 3485-3487 (2011)
  45. C.E. Gómez, J.L. Nájera, B. Perdiguero, J. García-Arriaza, C.O.S. Sorzano, V. Jiménez, R. González-Sanz, J.L. Jiménez, M.A. Muñoz-Fernández, J.C. López Bernaldo de Quirós, A.C. Guardo, F. García, J. Gatell, M. Plana, M. Esteban. The HIV/AIDS vaccine candidate MVA-B administered as a single immunogen in humans triggers robust, polyfunctional and selective effector memory T cell responses to HIV-1 antigens. J. Virology 85: 11468-11478 (2011)
  46. J. García-Arriaza, J.L. Nájera, C.E. Gómez, N. Tewabe, C.O.S. Sorzano, T. Calandra, T. Roger, M. Esteban. A Candidate HIV/AIDS Vaccine (MVA-B) Lacking Vaccinia Virus Gene C6L Enhances Memory HIV-1-specific T-cell Responses. Plos ONE, 6: e24244 (2011)
  47. A. G. Goodman, P. P. Heinen, S. Guerra, A. Vijayan, C.O.S. Sorzano, C.E. Gómez, M. Esteban.  A human multi-epitope recombinant vaccinia virus as a universal T-cell vaccine candidate against influenza virus. Plos ONE, 6: e25938 (2011)
  48. J. Vargas, J.A. Quiroga, C.O.S. Sorzano, J.C. Estrada, J.M. Carazo. Two-step demodulation based on Gram-Schmidt orthonormalization method. Optics Letters, 37: 443-445 (2012)
  49. J. Otón, C.O.S. Sorzano, E. Pereiro, J. Cuenca, R. Navarro, R. Marabini, J.M. Carazo. Image formation in cellular X-ray microscopy. J. Structural Biology (in press)
  50. A. Vijayan, C.E. Gómez, A.G. Goodman, L. Sánchez, C.O.S. Sorzano, M. Esteban. Vaccinia virus A27 protein as potent adjuvant: A case study with Malaria vaccine based on circumsporozoite protein. (submitted)
  51. C.O.S. Sorzano, M. Esteban. Adjuvant-like effect of vaccinia virus 14K protein: A Case Study with Malaria Vaccine based on the Circumsporozoite Protein. (submitted)
  52. J. Vargas, C.O.S. Sorzano, J.C. Estrada, J.M. Carazo. Generalization of the Principal Component Analysis algorithm for interferometry. (submitted)
  53. C.O.S. Sorzano, R. Aramayo, E. Larquet, J.M. Delarosa-Trevin, R. Núñez-Ramírez, O. Llorca, F. Tama, S. Jonić. Filming macromolecular complexes in action using transmission electron microscopy: Novel image analysis method for studying conformational changes. (submitted)
  54. C.E. Gómez, B. Perdiguero, J.L. Nájera, C.O.S.Sorzano, V. Jiménez, R. González-Sanz, M. Esteban. Removal of vaccinia virus genes that block interferon type I and II pathways improves adaptive and memory responses of the HIV/AIDS vaccine candidate NYVAC-C in mice. (submitted)
  55. J. Vargas, C.O.S. Sorzano, J.A. Quiroga, J.C. Estrada, J. M. Carazo. Fringe pattern denoising by image dimensionality reduction. (submitted)
  56. R. Nogales, S. Jonic, M. Vázquez, A. Pascual-Montano, C.O.S. Sorzano. 3DEM Loupe: analysis of the dynamics of macromolecular structures from electron microscopy. (submitted)

  1. C.O.S.Sorzano, R.Marabini, J.M.Carazo, E.Rietzel, R.R.Schröder, G.T.Herman, N.Boisset. Effects of uneven sampling in 3D reconstructions. Proc. of the 14th International Congress on Electron Microscopy (1998), Vol I (771-772).
  2. E.Rietzel, P.Schorsch, H.Müller, R.Marabini, C.O.S.Sorzano, J.M.Carazo, U.Schimpf, C.Leue, K.C.Holmes, R.R.Schröder. Zero-loss P-contrast in EFTEM . Proc. of the 14th International Congress on Electron Microscopy. (1998), Vol IV(421-422).
  3. C.O.S.Sorzano, R. Marabini, N. Boisset, E.Rietzel, R.R.Schröder, G.T.Herman, J.M.Carazo. Quantitative comparison of 3D reconstruction algorithms under conditions of uneven angular distribution in electron microscopy. Proc. of the 1999 International meeting on fully 3D image reconstruction in Radiology and Nuclear Medicine (1999), 267-270.
  4. C.O.S.Sorzano, R. Marabini, N. Boisset, E.Rietzel, R.R.Schröder, G.T.Herman, J.M.Carazo. Quantitative comparison of 3D reconstruction algorithms under conditions of uneven angular distribution in electron microscopy . Proc. of the VIII Symposium Nacional de Reconocimiento de formas y Análisis de imágenes, Bilbao (SNRFAI, 1999), Vol II, 35-36.
  5. J.M. Carazo, N. Jimenez-Lozano, C.O.S. Sorzano, M. Chagoyen. Towards more quantitative results from Three Dimensional Electron Microscopy of Macromolecules. Proc. of the 12th European Congress on Electron Microscopy (2000), Vol III (375-377).
  6. J.A. Velázquez Muriel, C.O.S.Sorzano, J.M.Carazo. Method development of combination of atomic force and electron microscopy data to obtain better 3D reconstructions . Proc. of the Spanish, Portuguese and French Microscopy Societies meeting at Barcelona. (2001).
  7. C.O.S.Sorzano, J.J. Fernández, R. Marabini, G.T. Herman, Y. Censor, J.M. Carazo. Transfer function restoration in 3D electron microscopy via iterative data refinement. Proc. of the 2001 International meeting on fully 3D image reconstruction in Radiology and Nuclear Medicine (2001), 133-136.
  8. C.O.S. Sorzano, R. Marabini, J. J. Fernández, J. A. Velázquez-Muriel, G. T. Herman, J. M. Carazo. New reconstruction conditions greatly improve the reconstruction quality. Proc. of the 15th International Congress on Electron Microscopy (2002), Vol. 3, 431-432.
  9. J.A. Velázquez Muriel, C.O.S. Sorzano, J.J. Fernández, J. M. Carazo. 2D ARMA models and parameter adjustment to estimate the CTF of the electron microscope. Proc. of the 15th International Congress on Electron Microscopy (2002), Vol. 3, 433-434.
  10. M.G. Gómez-Lorenzo, M. Valle, L.E. Donate, C. Gruss, M. Bárcena, C.O.S. Sorzano, J. Frank, J.M. Carazo. Structural studies of SV40 large T-antigen on the origin of replication. Proc. of the 15th International Congress on Electron Microscopy (2002), Vol. 2.
  11. C.O.S. Sorzano, R. Marabini, G. T. Herman, J. M. Carazo. Volumetric constraints in 3D tomography applied to electron microscopy. Proc. of the 1st International Symposium on Biomedical Imaging ISBI2002 (2002), 641-644.
  12. R. Marabini, C. O. S. Sorzano, J.J. Fernández, S. Matej, J.M. Carazo, G.T. Herman. 3D Reconstruction of 2D crystals from projections in real space. Proc. of the 1st International Symposium on Biomedical Imaging (2002), 689-692.
  13. C.O.S. Sorzano. Angular assignment in 3D Electron Microscopy using PCA and wavelet decomposition . Proc. of the RMSE-AMS joint conference (2003), Session 37, 5.
  14. J.M. Carazo, J.J. Fernández, G.T.Herman, S. Matej, R. Marabini, C.O.S. Sorzano. Algebraic reconstruction of 2D crystals from their projections. Proc. of the RMSE-AMS joint conference (2003), Session 37, 4.
  15. G.T.Herman, R. Marabini, C.O.S. Sorzano, J. Zubelli. Reconstruction by Chahine's method from Projections corrupted by Electron Microscope aberrations. Proc. of the RMSE-AMS joint conference (2003), Session 37, 5.
  16. C.O.S.Sorzano, P. Thévenaz, S. Jonic, C. El-Bez, S. De Carlo, J. Conway, B. L. Trus, M. Unser. Volumetric Spectral Signal-to-Noise Ratio. Proc. of the 13th European Microscopy Congress, Vol. I, 427-428 (2004)
  17. C.O.S.Sorzano, M. Blagov, P. Thévenaz, E. Myasnikova, M. Samsonova, M. Unser. Algorithm for spline-based elastic registration in application to confocal images of gene expression. Proc. of the 7th Intl. Conference on Pattern Recognition and Image Analysis, Vol. 3: 928-931 (2004)
  18. G. Cañadas, M. Fernández-López, R. García-García, M. Lama, A. Sánchez-Alberca, C.O.S. Sorzano. Framework for automatic generation of ontology mappings. Jornadas Iberoamericanas de Ingeniería del Software e Ingeniería del Conocimiento Vol I: 293-304 (2004)
  19. S. Jonic, C.O.S. Sorzano, P. Thévenaz, M. Unser, N. Boisset. Spline-Based approach to orientation assignment for three-dimensional electron microscopy. Proc. of Imaging for medical and life sciences Symposium (Imvie2) Vol I: 40-42 (2005)
  20. S.H.W. Scheres, A.J. Merino, C.O.S. Sorzano, J.M. Carazo. Grid computing in 3D Electron Microscopy Image Processing using Xmipp. 18th IEEE Intl. Symposium on Computer-Based Medical Systems (CBMS) (2005)
  21. M. Chagoyen, C.O.S. Sorzano, P. Carmona-Sáez, J.M. Carazo, A. Pascual-Montano. Relating discrete annotation schemes in the functional space through literature analysis. Proc. of the 13th Annual Intl. Conference on Intelligent Systems in Molecular Biology (2005)
  22. S.H.W. Scheres, R. Marabini, C.O.S. Sorzano, G.T. Herman, J.M. Carazo. Maximum-likelihood refinement of electron microscopy images. Gordon Research Conference (2005)
  23. I. Arganda-Carreras, C.O.S. Sorzano, R. Marabini, J.M. Carazo, C. Ortiz-de-Solórzano. Skeleton-based 3D reconstruction of histological sections. Proc. of the Intl. Conference on Biomedical Visualization, MediViz (2005)
  24. A. Sánchez-Alberca, R. García-García, C.O.S. Sorzano, C. Gutiérrez-Cossío, M. Chagoyen, M. Fernández-López. AMON: A Software System for Automatic Generation of Ontology Mappings.  Workshop on Building and Applying Ontologies for the Sematic Web (BAOSW'05)  (2005)
  25. C.O.S. Sorzano, J. Rodrigo, E. Ortiz, M. López. Note on "Wavelets, Gaussian mixtures and Wiener filtering". Congreso Anual de la Sociedad Española de Ingeniería Biomédica, CASEIB2005, (2005)
  26. C. Pérez Gandía, G. Garcia-Sáez, A. Rodríguez Herrero, M.E. Hernando Pérez, C.O.S. Sorzano, E.J. Gómez Aguilera, F. del Pozo Guerrero. Metodología de evaluación de modelos de predicción de glucemia en pacientes diabéticos basados en redes neuronales. Congreso Anual de la Sociedad Española de Ingeniería Biomédica, CASEIB2005 (2005)
  27. B. Telenczuk, M.J. Ledesma-Carbayo, J.A. Velázquez-Muriel, C.O.S. Sorzano, J.M. Carazo, A. Santos. Molecular image registration using mutual information and differential evolution optimization. Proc. of the Third Intl. Syposium on Biomedical Imaging, ISBI2006 (2006)
  28. I. Arganda-Carreras,  C.O.S. Sorzano, R. Marabini, J.M. Carazo, C. Ortiz-de-Solórzano, J. Kybic. Consistent and elastic registration of histological sections using vector-spline regularization. 2nd Intl. Workshop on Computer Vision Approaches to Medical Image Analysis, CVAMIA2006
  29. C.O.S. Sorzano, P. Thévenaz, I. Valdés, A. Beloso, M. Unser. Elastic image registration with applications to Proteomics. Proc. of the Vth International Workshop on Information Optics: 300-309 (2006)
  30. C. Messaoudi, S. Marco, C.O.S. Sorzano, T. Boudier. Evaluation of multiple-axis tomography in Tomo-J, a freeware plugin for the Java based public software ImageJ. Intl. Microscopy Congress (2006)
  31. C. Messaoudi, S. Halary, C.O.S. Sorzano, S. Marco, T. Boudier. TomoJ: new tools for electron tomography. Proc of the Conf. on ImageJ: 155-161 (2006)
  32. S. Jonic, C.O.S. Sorzano, M. Cottevieille, E. Larquet, N. Boisset. Improvement of visibility of diffraction rings for classification of micrographs and their local areas. Gordon Research Conference (2006)
  33. S. Jonic, C.O.S. Sorzano, M. Cottevieille, E. Larquet, N. Boisset.  Nouvelle approche de visualisation et tri des diffractogrammes de cryo-MET basé sur l'anistropie. Proc. of the 20th Conference of the French Biophysical Society: 171, (2006)
  34. A. Iriarte-Ruiz, R. Marabini, C.O.S. Sorzano. Probabilidad de detección en cámaras PET de detectores continuos. Congreso Anual de la Sociedad Española de Ingeniería Biomédica, CASEIB2006 (2006)
  35. C.O.S. Sorzano, M.C. Pérez-Gandía, A. Otero. Mathematical models in image processing. Proc. 1st Intl. Congress of Mathematics in Engineering and Architecture, 307-315 (2007, invited speaker)
  36. M. Cottevieille, S. Jonic, C.O.S. Sorzano, E. Larquet, N. Boisset. 3D reconstruction of macromolecular assemblies at subnanometric resolution. Proc. 3rd Serbian Congress of Microscopy (2007)
  37. S. Jonic, C.O.S. Sorzano, N. Boisset. 3D transmission electron microscopy of biological nanomachines. Proc. 3rd Serbian Congress of Microscopy (2007)
  38. S. Jonic, C.O.S. Sorzano, M. Cottevieille, E. Larquet, C. Venien-Bryan, N. Boisset. Enhanced diffractograms for image sorting and improvement of robustness and accuracy of CTF estimation: Application on high-resolution reconstruction of glutamate synthase and phosphorilase kinase. Gordon Conference (2007)
  39. A. Otero, P. Félix, F. Palacios, C. Pérez-Gandía, C.O.S. Sorzano. Intelligent alarms for patient supervision. Proc. 5th Intl. Syposium on Intelligent Signal Processing, WISP: 157-162 (2007)
  40. A. Otero, P. Félix, J. M. Rodríguez, C. Zamarrón, C.O.S. Sorzano, C. Pérez-Gandía. Algoritmos estructurales basados en lógica borrosa para la identificación de apneas e hipoapneas. Actas Congreso Anual de la Sociedad Española de Ingeniería Biomédica, CASEIB2007, (2007).
  41. A. Otero, C.O.S. Sorzano, E.M. Olmos, P. Félix, M.R. Álvarez, C. Zamarrón. A Fuzzy Constraint Satisfaction Approach to Identify and Characterize Apnea Episodes. 2nd Intl. Conference in Bioinformatics and Biomedical Engineering (iCBBE2008), Shangai, China. 2024-2027, (2008).
  42. L. Fernández-de-Manuel, M.J. Ledesma-Carbayo, J. Atienza-Herrero, C.O.S. Sorzano, J.M. Carazo, A. Santos. Flexible fitting of protein models into 3D-EM maps by using an image registration algorithm. International Symposium on Structural Analysis of Supramolecular Assemblies by Hybrid Methods (2008)
  43. L. Fernández-de-Manuel, M.J. Ledesma-Carbayo, J. Atienza-Herrero, C.O.S. Sorzano, J.M. Carazo, A. Santos. Flexible image registration for the identification of best fitted protein models in 3D-EM maps. Proc. Intl. Syposium on Biomedical Imaging, ISBI: 983-986 (2008)
  44. C. Pérez Gandía, M. E. Hernando, C.O.S. Sorzano, A. Otero Quintana, G. García Sáez, A. Rodríguez Herrero, B. M. Rigla, A. de Leiva, E. J. Gómez. Neural networks for glucose prediction in continuous glucose monitoring. Proc. of Advanced Technologies and treatments of diabetes. (2008)
  45. S. Jonic, C.O.S. Sorzano, F. Tama, E. Larquet, N. Boisset. A hybrid method coupling normal mode analysis with projection matching to study structural flexibility of macromolecular assemblies. Gordon Research Conference on Three Dimensional Electron Microscopy, (2008).
  46. I. Arganda-Carreras, C.O.S. Sorzano, J. Kybic, C. Ortiz de Solórzano. bUnwarpJ: Consistent and elastic registration in ImageJ. Methods and applications. ImageJ Conference Users-Developers (2008)
  47. C.O.S. Sorzano, C. Messaoudi, M. Eibauer, R. Hegerl, R. Marabini, S. Nickell, S. Marco, J.M. Carazo. Registration of electron tomography single-axis tilt series without fiducial markers. Joint Spanish Portuguese Microscopy Congress: 215-216 (2009)
  48. D. Bravo-Alcobendas, C.O.S. Sorzano. Clustering of biomedical scientific papers. IEEE Workshop on Intelligent Signal Processing (2009)
  49. C.O.S. Sorzano, A. Iriarte, R. Marabini, J.M. Carazo. Effects of the downsampling scheme on three-dimensional electron microscopy of single particles.  IEEE Workshop on Intelligent Signal Processing (2009)
  50. S. Jonic, C.O.S. Sorzano, F. Tama, E. Larquet, N. Boisset. A hybrid method coupling normal mode analysis with projection matching to study structural flexibility of macromolecular assemblies. Proc. 11th Congress of the French Society of Microscopies, (2009)
  51. J.M. Carazo, S.H.W. Scheres, C.O.S. Sorzano. Understanding the dynamics of macromolecular machines by Three-Dimensional Electron Microscopy: The methods and some of their applications. Critical Assessment of Predicted Interactions (2009).
  52. M. Li, G. Xu, C.O.S. Sorzano, R. Melero, C. Bajaj. Electric-potential reconstructions of single particles using L2-gradient flows. 3rd Intl. Conf. on BioMedical Engineering and Informatics (2010).
  53. R. Marabini, J. Otón, R. Navarro, C.O.S. Sorzano, J.M. Carazo. X-ray tomography: an image formation model. Annual meeting of the Nordic Microscopy Society Scandem (2010)
  54. J.M. Carazo, S.H.W. Scheres, C.O.S. Sorzano. Understanding the dynamics of macromolecular machines by Three-Dimensional Electron Microscopy: The methods and some of their applications. Annual meeting of the Nordic Microscopy Society Scandem (2010).
  55. J. Otón, C.O.S. Sorzano, J.M. Carazo, R. Marabini. First considerations on the reconstruction of X-ray tomography. Intl. Microscopy Congress (2010)
  56. J. Otón, R. Marabini, C.O.S. Sorzano, J.M. Carazo. Limitations in 3D reconstruction of X-ray tomography. Intl. Microscopy Congress (2010)
  57. A. Álvarez-Cabrera, C.O.S. Sorzano, J. Busselez, R. González, Z. You, J.M. Carazo. Structural analysis of the Mouse MCM4/6/7 helicase in complex with Cdt1. Proc. XXXIII Congreso de la Soc. Española Bioquímica y Biología Molecular (2010)
  58. A. Quintana, C.O.S. Sorzano, R, Marabini, J.M. Carazo. Benchmarking for 3D Electron Microscopy. X Jornadas de Bioinformática (2010)
  59. J.Otón, R. Marabini, C.O.S.Sorzano, J.M.Carazo. X-ray Cellular Tomography: How the images are formed and how the volumes should be reconstructed. EMBL 6th Intl. Congress on Electron Tomography (2011)
  60. A. Deideri, G. Caffarena, J.A. López, C.O.S. Sorzano. Acceleration of Electron Microscopy applications with GPGPUs and FPGAs. XI Jornadas de Computación Reconfigurable y Aplicaciones (2011)
  61. A.G. Goodman, S. Guerra, A. Vijayan, P.P. Heinen, C.O.S. Sorzano, M. Esteban. A recombinant Vaccinia virus-based T cell vaccine against influenza virus reduces lung viral load upon virus challenge. Gene and Cell Therapy Conference (2011)
  62. J. García-Arriaza, J.L. Nájera, C.E. Gómez, N. Tewabe, C.O.S. Sorzano, T. Calandra, T. Roger, M. Esteban. A candidate HIV/AIDS vaccine (MVA-B) that enhances the magnitude and polyfunctionality of memory HIV-1-specific T-cell responses. AIDS Vaccine (2011)
  63. R. Marabini, J. Otón, C.O.S. Sorzano, J.M. Carazo. X-ray Cellular Tomography: How the images are formed and how the volumes should be reconstructed. 2nd Microscopy Congress of the Portuguese and Spanish Societies (2011)
  64. R. Marabini, J.M. de la Rosa-Trevín, J. Cuenca, A. E. Rey, J. Vega, J. Otón, C.O.S. Sorzano, J.M. Carazo. Xmipp 3.0: a specialized suite for image processing in microscopy. 2nd Microscopy Congress of the Portuguese and Spanish Societies (2011)
  65. C.O.S. Sorzano, J. Otón, J. Cuenca, A. Zaldivar-Pérez, G. Caffarena, J. Sánchez-Jiménez, C. Messaoudi, S. Marco, R. Marabini, J.M. Carazo. Image processing for Cellular tomography using soft X-rays. 9th Intl. Symposium on Biomedical Imaging (2012, Invited talk)
  66. C.O.S. Sorzano, J. Cuenca, J. Sánchez-Jiménez, C. Messaoudi, J.M. Carazo. Java-C++ hybrid image processing using ImageJ: an example in electron and X-rays tomography Xmipp-TomoJ. Bioimage Analysis Workshop (2012, Invited talk)
  67. I. Sánchez-Caballero, A. Muniategui, R. Nogales-Cadenas, C.O.S. Sorzano, A. Rubio, A. Pascual-Montano. Improving microRNA target prediction by performance-based algorithm combination. (submitted)
  68. A. Quintana, J. Vargas, A. Poza, J.R. Macías, R. Marabini, C.O.S. Sorzano, J. M.Carazo. Scipion: Towards electron microscopy integration. (submitted)

 

Non peer-reviewed articles
  1. C.O.S. Sorzano. Elastic registration with vector-spline regularization. Seminario de modelización matemática en imagen médica, UNED (2007) (video)
  2. C.O.S. Sorzano, C. Bocos de Prada. Biotecnología Computacional (versión extendida). EPS CEU Internal report.
  3. C.O.S. Sorzano, C. Bocos de Prada. Biotecnología Computacional. Bit (Revista del Colegio de Ingenieros de Telecomunicación), 166: 82-84 (2008).
  4. C.O.S. Sorzano, J. M. Carazo. Avances en el procesamiento de imágenes biológicas a nivel microscópico. Bit (Revista del Colegio de Ingenieros de Telecomunicación), 168: 72-75 (2008).
  5. C.O.S. Sorzano, J. M. Carazo. Avances en el procesamiento de imágenes biológicas a nivel microscópico: Restauración de imágenes. Bit (Revista del Colegio de Ingenieros de Telecomunicación), 169: 62-63 (2008).
  6. C.O.S. Sorzano, J. M. Carazo. Avances en el procesamiento de imágenes biológicas a nivel microscópico: Eliminación de ruido. Bit (Revista del Colegio de Ingenieros de Telecomunicación), 171: 69-72 (2008).
  7. C.O.S. Sorzano, J. M. Carazo. Avances en el procesamiento de imágenes biológicas a nivel microscópico: Segmentación. Bit (Revista del Colegio de Ingenieros de Telecomunicación), 172: 71-74 (2008).
  8. C.O.S. Sorzano, J. M. Carazo. Avances en el procesamiento de imágenes biológicas a nivel microscópico: Representación e integración. Bit (Revista del Colegio de Ingenieros de Telecomunicación) (en prensa)